User:DukeEgr93/Kidneys

Process

• Get images
• Use NameSorter to rename images
  • Change Prefix, Slices, SCALE, IGNORE variables as needed
  • Files will be named SlicesNNNN.JPG, SCALENNNN.JPG and IGNORENNNN.JPG
    • Slices will be a serial number from 1; SCALE and IGNORE will keep the original index number
• Use CropFiles to make a script that will convert to cropped versions
  • Open a file that shows the largest Kidney area to get valid boundaries
  • Determine coordinates for top left and bottom right corner - leave room as Kidney image must be surrounded with white
  • Change TOP, BOT, LFT, and RGT to match
  • Change number of Slices
  • After running, go to UNIX and run "./CropFiles.run"
  • New files will be CropNNNN.JPG
• Use UnWax to process files
  • Change number of slices
  • Define colors for damage, collection system, and vasculature
    • Typically green, blue, and yellow, respectively